Search results for "complex systems"

showing 10 items of 73 documents

Identifying Early Warning Signals for the Sudden Transition from Mild to Severe Tobacco Etch Disease by Dynamical Network Biomarkers

2019

This article belongs to the Special Issue The Complexity of the Potyviral Interaction Network.

0106 biological sciences0301 basic medicineComplex systemsSystems biologyPotyvirusDiseaseBiologytobacco etch virusSeverity of Illness Index01 natural sciencesArticlePlant VirusesTranscriptomeViral Proteins03 medical and health sciencesPlant-virus interactionpotyvirusGene Expression Regulation PlantVirologyProtein Interaction MappingTobaccoGene Regulatory NetworksProtein Interaction Mapscomplex systemsGenePlant DiseasesGeneticsTransition (genetics)Tobacco etch virusGene Expression Profilingsystems biologyDNBBiotic stressresponse to infectionbiology.organism_classificationplant-virus interactionTobacco etch virusphase transitionsprotein-protein interaction networks030104 developmental biologyInfectious DiseasesPhase transitionsHost-Pathogen InteractionsMutationBiomarker (medicine)BiomarkersSignal Transduction010606 plant biology & botanyViruses
researchProduct

Gene-based and semantic structure of the Gene Ontology as a complex network

2012

The last decade has seen the advent and consolidation of ontology based tools for the identification and biological interpretation of classes of genes, such as the Gene Ontology. The information accumulated time-by-time and included in the GO is encoded in the definition of terms and in the setting up of semantic relations amongst terms. This approach might be usefully complemented by a bottom-up approach based on the knowledge of relationships amongst genes. To this end, we investigate the Gene Ontology from a complex network perspective. We consider the semantic network of terms naturally associated with the semantic relationships provided by the Gene Ontology consortium and a gene-based …

0301 basic medicineStatistics and ProbabilityFOS: Computer and information sciencesPhysics - Physics and SocietyComplex systemComputer scienceMolecular Networks (q-bio.MN)Complex systemFOS: Physical sciencesNetworkCondensed Matter PhysicPhysics and Society (physics.soc-ph)computer.software_genreQuantitative Biology - Quantitative MethodsStatistics - ApplicationsGeneSemantic network03 medical and health sciencesSemantic similarityQuantitative Biology - Molecular NetworksApplications (stat.AP)GeneQuantitative Methods (q-bio.QM)Community detectionGene ontologybusiness.industryOntologyOntology-based data integrationComplex networkCondensed Matter PhysicsBipartite system030104 developmental biologyBipartite system; Community detection; Complex systems; Genes; Networks; Ontology; Condensed Matter Physics; Statistics and ProbabilityFOS: Biological sciencesOntologyWeighted networkData miningArtificial intelligenceComputingMethodologies_GENERALbusinesscomputerNatural language processing
researchProduct

Coupling and Complexity of Interaction of STCA Networks

2009

This paper provides an overview on the results of an ENAV feasibility study, where we exploited an automatic safety data gathering tool to analyze the ATM system performances. In particular, it addresses the use of the EUROCONTROL tool, ASMT (Automatic Safety Monitoring Tool), as a support to monitor STCA performance. The contribution of this study is to explore how analysis methods derived from complex systems theory (i.e. network analysis) can assist in the understanding, monitoring and management of the performance of ATM systems. Our data show that a large number of STCAs do not occur in isolation, but rather that in roughly half of the cases the aircraft involved in an STCA are subsequ…

Air Traffic Management Networks Complex systems
researchProduct

COVARIANCE AND CORRELATION ESTIMATORS IN BIPARTITE SYSTEMS

2017

We present a weighted estimator of the covariance and correlation in bipartite complex systems with a double layer of heterogeneity. The advantage provided by the weighted estimators lies in the fact that the unweighted sample covariance and correlation can be shown to possess a bias. Indeed, such a bias affects real bipartite systems, and, for example, we report its effects on two empirical systems, one social and the other biological. On the contrary, our newly proposed weighted estimators remove the bias and are better suited to describe such systems.

Bipartite systemsBiological systemsWallenius non-central Hypergeometric DistributionCorrelation AnalysisComplex SystemsSocial systemsSettore FIS/07 - Fisica Applicata(Beni Culturali Ambientali Biol.e Medicin)
researchProduct

Development of non-equilibrium Green's functions for use with full interaction in complex systems

2016

We present an ongoing development of an existing code for calculating groundstate, steady-state, and transient properties of many-particle systems. The development involves the addition of the full four-index two electron integrals, which allows for the calculation of transport systems, as well as the extension to multi-level electronic systems, such as atomic and molecular systems and other applications. The necessary derivations are shown, along with some preliminary results and a summary of future plans for the code. peerReviewed

Chemical Physics (physics.chem-ph)HistoryCondensed Matter - Mesoscale and Nanoscale PhysicsComputer scienceComplex systemFOS: Physical sciencesState (functional analysis)Extension (predicate logic)Molecular systemsComputer Science ApplicationsEducationDevelopment (topology)Physics - Chemical PhysicsMesoscale and Nanoscale Physics (cond-mat.mes-hall)Code (cryptography)Transient (computer programming)Green's functionsStatistical physicscomplex systemsElectronic systems
researchProduct

Dynamics of Two Picophytoplankton Groups in Mediterranean Sea: Analysis of the Deep Chlorophyll Maximum by a Stochastic Advection-Reaction-Diffusion …

2013

A stochastic advection-reaction-diffusion model with terms of multiplicative white Gaussian noise, valid for weakly mixed waters, is studied to obtain the vertical stationary spatial distributions of two groups of picophytoplankton, i.e., picoeukaryotes and Prochlorococcus, which account about for 60% of total chlorophyll on average in Mediterranean Sea. By numerically solving the equations of the model, we analyze the one-dimensional spatio-temporal dynamics of the total picophytoplankton biomass and nutrient concentration along the water column at different depths. In particular, we integrate the equations over a time interval long enough, obtaining the steady spatial distributions for th…

ChlorophyllPopulation DynamicsPopulation ModelingRandom processeAtmospheric scienceschemistry.chemical_compoundTheoretical EcologyWater columnMediterranean seaDeep chlorophyll maximumCalculusMultidisciplinaryEcologybiologyEcologyApplied MathematicsPhysicsQStatisticsRComplex SystemsStochastic differential equationsInterdisciplinary PhysicsMedicineDeep chlorophyll maximumProchlorococcusResearch ArticleChlorophyll aScienceStatistical MechanicsDifferential EquationsPhytoplanktonMarine ecosystemMediterranean SeaSpatial ecologyStatistical MethodsPhytoplankton dynamicBiologyComputerized SimulationsStochastic ProcessesPopulation BiologyAdvectionComputational BiologyRandom VariablesModels TheoreticalSpatial ecology; Marine ecosystems; Phytoplankton dynamics; Deep chlorophyll maximum; Random processes; Stochastic differential equationsProbability Theorybiology.organism_classificationMarine EnvironmentsSettore FIS/07 - Fisica Applicata(Beni Culturali Ambientali Biol.e Medicin)Nonlinear DynamicschemistryChlorophyllComputer SciencePhytoplanktonEcosystem ModelingMathematicsEcological EnvironmentsPLoS ONE
researchProduct

The Influence of Collective Behavior on Pacing in Endurance Competitions

2015

A number of theoretical models have been proposed in recent years to explain pacing strategies observed in individual competitive endurance events. These have typically related to the internal regulatory processes that inform the making of decisions relating to muscular work rate. Despite a substantial body of research which has investigated the influence of collective group dynamics on individual behaviors in various animal species, this issue has not been comprehensively studied in individual athletic events. This is somewhat surprising given that athletes often directly compete in close proximity to one another, and that collective behavior has also been observed in other human environme…

Collective behaviorOperations researchPhysiologyCompromisemedia_common.quotation_subjectMental fatigueTheoretical modelsWork rateendurance performancelcsh:PhysiologyPhysiology (medical)Medicinecomplex systemsAnimal speciesmedia_commonlcsh:QP1-981biologyAthletesbusiness.industryCognitiondecision-makingMental Fatiguebiology.organism_classificationQPPerspectivesportbusinessCognitive psychologyFrontiers in Physiology
researchProduct

Community Currencies (CCs) in Spain: An empirical study of their social effects

2016

Despite its sudden proliferation along the economic crisis period, no previous study has investigated the social effects of the community currency (CCs) experiences in Spain. Previous research on CCs experiences from different countries provided evidences about social capital improvement, introducing CCs as sustainability tools. This research uses the theoretical frameworks of social capital and complex adaptive systems to approach concepts like sustainability, networks, trust, norms, participation and cooperation. Statistical analysis of the data collected in June 2013 through online survey explores social capital and resilience indicators among the Spanish exchange community users, conclu…

Community currenciesmonetary systemsocial capitalcomplex systemssustainabilityresilience
researchProduct

Dynamics of two competing species in the presence of Lévy noise sources

2010

We consider a Lotka-Volterra system of two competing species subject to multiplicative alpha-stable Lévy noise. The interaction parameter between the species is a random process which obeys a stochastic differential equation with a generalized bistable potential in the presence both of a periodic driving term and an additive alpha-stable Lévy noise. We study the species dynamics, which is characterized by two different regimes, exclusion of one species and coexistence of both. We find quasi-periodic oscillations and stochastic resonance phenomenon in the dynamics of the competing species, analysing the role of the Lévy noise sources.

Competitive BehaviorComplex systemsBistabilityStochastic resonancePopulation DynamicsComplex systemModels BiologicalStochastic differential equationControl theoryQuantitative Biology::Populations and EvolutionAnimalsHumansComputer SimulationStatistical physicsEcosystemMathematicsPopulation dynamics and ecological pattern formationModels StatisticalStochastic processDynamics (mechanics)Multiplicative functionStochastic analysis methods (Fokker-Planck Langevin etc.)Adaptation PhysiologicalRandom walks and Lévy flightQuasiperiodic functionPredatory Behavior
researchProduct

Preface

2019

The Enrico Fermi Schools are a highly prestigious series of summer schools of the Italian Physical Society with a tradition of more than 60 years and with many Nobel laureates as lecturers (https://www.sif.it/attivita/scuola_fermi/). The International Schools devote special care in planning the program and produces proceedings of the school that have become classics. Recently an increasing number of interdisciplinary topics have been selected and our school fits into this trend. Our school will consider complex systems of social and economic origin by teaching and discussing concepts and topics of computational social science and econophysics. These are fields, where physicists, computer sc…

Complex Systems Complex networks Econophysics Computational social science Epidemic spreadingSettore FIS/07 - Fisica Applicata(Beni Culturali Ambientali Biol.e Medicin)
researchProduct